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2024.8.27 Seminar
DECODE seminar in August
Speaker: Yungyu Tsai (Laboratory for Prediction of Cell Systems Dynamics)
Title: Advanced ALPS approaches : studying rare cell behaviors by real-time monitoring and automated cell picking
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2024.7.30 Seminar
DECODE seminar in July
Speaker: Yumi Konagaya (Laboratory for Quantitative Biology of Cell Fate Decision)
Title: Dynamic control of cell proliferation coupled with intestinal stem cell differentiation
Speaker: Chikara Furusawa (Laboratory for Multiscale Biosystem Dynamics)
Title: Decoding Bacterial Evolution Through High-Throughput Experimental Evolution
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2024.6.4 Seminar
DECODE seminar in May
Speaker: Hideya Sakaguchi (RIKEN BDR-Otsuka Pharmaceutical Collaboration Center)
Title: Imaging of self-organizing process during patterning formation of spinal cord organoids
Speaker: Li-Kun Phng (Laboratory for Vascular Morphogenesis)
Title: Towards visualization and measurement of cytoplasmic viscosity in endothelial cells in the zebrafish
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2024.2.27 Seminar
DECODE seminar in February
Speaker: Chongxia Zhong (Laboratory for Cell Polarity Regulation)
Title: Development of various fluorescence lifetime sensors using mTurquiose2 platform
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2024.1.23 Seminar
DECODE seminar in January
Speaker: Minoru Takasato (Laboratory for Human Organogenesis)
Title: Cellular specificity of MET during nephrogenesis
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2023.10.24 Seminar
DECODE seminar in October
Speaker: Osamu Takenouchi (Laboratory for Chromosome Segregation)
Title: Development of an imaging toolbox for analysis of individual chromosome dynamics in live mouse oocytes
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2023.9.26 Seminar
DECODE seminar in September
Speaker: Masaharu Uno (Laboratory for Molecular Biology of Aging)
Title: Prediction of aging status using image data of C. elegans
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2023.7.25 Seminar
DECODE seminar in July
Speaker: Ko Sugawara (Laboratory for Developmental Dynamics)
Title: ELEPHANT: an image analysis tool for cell tracking using sparse annotation-based deep learning
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2023.6.27 Seminar
DECODE seminar in June
Speaker: Hideya Sakaguchi (RIKEN BDR-Otsuka Pharmaceutical Collaboration Center)
Title: Capturing self-organized formation process of epithelium and region using human neural organoids
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2023.5.23 Seminar
DECODE seminar in May
Speaker: Koki Yamamoto (Laboratory for Cell Polarity Regulation)
Title: Investigation of liquid properties in nanochannels and its application
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2023.4.25 Seminar
DECODE seminar in April
Speaker: Kensuke Sasaki (Laboratory for Comprehensive Bioimaging)
Title: Toward the DECODing the cell state using Raman x RNA-sequence cellular fingerprintingcellular fingerprinting
Speaker: Junya Ichinose (Laboratory for Comprehensive Bioimaging)
Title: Quantitative prediction of rice starch digestibility using Raman spectroscopy and multivariate calibration analysis
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2023.3.28 Seminar
DECODE seminar in March
Speaker: SHENGQUN HOU (Laboratory for Neuroepitranscriptomics)
Title: SCAMAN: a high through-put spine analysis method for brain-wide excitatory transmission evaluation
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2023.2.28 Seminar
DECODE seminar in February
Speaker: Daisuke Taniguchi (Laboratory for Cell Polarity Regulation)
Title: Cell tracking using rotation-invariant fingerprinting
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2023.1.24 Seminar
DECODE seminar in January
Speaker: Minoru Takasato (Laboratory for Human Organogenesis)
Title: Cellular specificity of MET during nephrogenesis
Speaker: Mitsuru Morimoto (Laboratory for Lung Development and Regeneration)
Title: Exploring Features for Lung Tissue Stem Cells Using Intracellular Structural Labeling Technology -
2022.12.20 Seminar
DECODE seminar in December
Speaker: Jianshi Jin (Laboratory for Prediction of Cell Systems Dynamics)
Yungyu Tsai(Laboratory for Prediction of Cell Systems Dynamics)
Title: Upgrading of ALPS (Automated Live-imaging and cell Picking System) towards wider applications. -
2022.11.22 Seminar
DECODE seminar in November
Speaker: Naoya Tochio (Laboratory for Cellular Structural Biology)
Title: Hydrogen peroxide-induced changes in HeLa and Jurkat cells observed using Cell-condition & Cell-secretion tandem NMR
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2022.10.25 Seminar
DECODE seminar in October
Speaker: Chentao WEN (Laboratory for Developmental Dynamics)
Title: Exploring brain dynamics and structure with machine learning techniques
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2022.10.4 Seminar
DECODE seminar in September
Speaker: Sooyeon Kim (Laboratory for Cell Systems Control)
Title: Next-generation bioassays using 3D single-molecule optical imaging
Speaker: Osamu Takenouchi (Laboratory for Chromosome Segregation)
Title: Development of an imaging tool box for analysis of individual chromosome dynamics in live mouse oocytes -
2022.8.23 Seminar
DECODE seminar in August
Speaker: Nobuhisa Okada (Laboratory for Cell Asymmetry)
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2022.7.26 Seminar
DECODE seminar in July
Speaker: Kensuke Sasaki (Laboratory for Comprehensive Bioimaging)
Title: Citrus fruits quality assessment using fluorescence multispectral imaging
Speaker: Hideaki Fujita (Laboratory for Comprehensive Bioimaging)
Title: Estimation of crossbridge state changes during cardiomyocyte beating using second harmonic generation anisotropy measurements -
2022.6.28 Seminar
DECODE seminar in June
Speaker: Hideya Sakaguchi (RIKEN BDR-Otsuka Pharmaceutical Collaboration Center)
Title: Capturing the neuroepithelium formation during the development of neural organoids
Speaker: Masaharu Uno (Laboratory for Molecular Biology of Aging)
Title: Prediction of C. elegans aging status using image data -
2022.5.24 Seminar
DECODE seminar in May
Speaker: Zhong Chongxia (Laboratory for Cell Polarity Regulation)
Speaker: Yugo Inutsuka (Laboratory for Cell Polarity Regulation)
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2022.4.26 Seminar
DECODE seminar in April
Speaker: Yo Tanaka (Laboratory for Integrated Biodevice)
Title: Investigation and application of nanospace properties
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2022.3.22 Seminar
DECODE seminar in March
Speaker: Tobias Frick (Laboratory for Prediction of Cell Systems Dynamics)
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2022.2.22 Seminar
DECODE seminar in February
Speaker: Tomohiro Masuda (Laboratory for Retinal Regeneration)
Title: Single cell analysis of human iPS-derived retinal organoids
Speaker: Minoru Takasato (Laboratory for Human Organogenesis)
Title: Cell specificity of undergoing MET during kidney development -
2022.1.25 Seminar
DECODE seminar in January
Speaker: Shuichi Onami (Laboratory for Developmental Dynamics)
Title: What is Research DX at RIKEN and BDR? How should we promote it?
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2021.12.21 Seminar
DECODE seminar in December
Speaker: Naoya Tochio (Laboratory for Cellular Structural Biology)
Title: Hydrogen peroxide-induced changes in HeLa cells observed using Cell-condition & Cell-secretion tandem NMR
Speaker: Mitsuru Morimoto(Laboratory for Lung Development and Regeneration)
Title: Decoding new lung stem cell features by single-cell morphometry. -
2021.11.30 Seminar
DECODE seminar in November
Speaker: Kensuke Sasaki (Laboratory for Comprehensive Bioimaging)
Title: Towards the decoding of citrus fruit states with multispectral imaging
Speaker: Junya Ichinose(Laboratory for Comprehensive Bioimaging)
Title: Specific detection of microRNAs by surface-enhanced resonance Raman scattering -
2021.10.26 Seminar
DECODE seminar in October
Speaker: Nuria Taberner (Laboratory for Vascular Morphogenesis)
Title: Actomyosin organization in lumenized developing blood vessels.
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2021.9.28 Seminar
DECODE seminar in September
Speaker: Daisuke Takao (Laboratory for Cell Polarity Regulation)
Title: AI-based cell tracking and profiling for analysis of cell population dynamics
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2021.7.27 Seminar
DECODE seminar in July
Speaker: Jianshi (Frank) Jin (Laboratory for Prediction of Cell Systems Dynamic)
Title: Decoding single-cell transcriptomic states from cell images enabled by robotic data acquisition and deep learning
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2021.6.22 Seminar
DECODE seminar in June
Speaker: Sooyeon Kim (Laboratory for Cell Systems Control)
Title: Next-generation biochemical analyses using single-molecule volumetric imaging
Speaker: Osamu Takenouchi(Laboratory for Chromosome Segregation)
Title: Development and application of an imaging tool for analyzing individual chromosome dynamics in live mouse oocytes -
2021.5.25 Seminar
DECODE seminar in May
Speaker: Koji Kyoda (Laboratory for Developmental Dynamics)
Title: Computational analysis of nuclear division dynamics in early C. elegans embryos -
2021.4.27 Seminar
DECODE seminar in April
Speaker: Hideya Sakaguchi (RIKEN BDR-Otsuka Pharmaceutical Collaboration Center)
Title:Towards decoding the mechanism of neuroepithelium formation during the development of neural organoids. -
2021.3.23 Seminar
DECODE seminar in March
Speaker: Yo Tanaka (RIKEN BDR-Otsuka Pharmaceutical Collaboration Center)
Title:Nano fluidic chip -From micro to nano- -
2021.2.16 Seminar
DECODE seminar in February
Speaker: Go Shioi (Laboratory for Comprehensive Bioimaging)
Title:Next-generation SPIM : from single cells to a whole embryo
Speaker: Hideaki Fujita (Laboratory for Comprehensive Bioimaging)
Title:Distorted cardiomyogenesis pathway of disease-derived iPSC revealed by Raman spectroscopy -
2021.1.26 Seminar
DECODE seminar in January
Speaker: Tomohiro Masuda (Laboratory for Retinal Regeneration)
Title:Identification of the cellular properties of retinal progenitor cells suitable for transplantation by using scRNA-seq -
2020.12.22 Seminar
DECODE seminar in Dcember
Speaker: Kazuho Ikeda (Laboratory for Cell Polarity Regulation)
Title:Live imaging of genomic locus by using specific fluorescent probes. -
2020.11.24 Seminar
DECODE seminar in November
Speaker: Taisaku Ogawa, Jianshi Jin (Laboratory for Prediction of Cell Systems Dynamics)
Title:Towards deep learning-based prediction of single cell gene expression state from time-lapse images -
2020.10.27 Seminar
DECODE seminar in October
Speaker: Naoya Tochio (Laboratory for Cellular Structural Biology)
Title: The tandemly connected NMR for noninvasive observation of cell state
Speaker: Takashi Fujimura (Laboratory for Lung Development and Regeneration)
Title: Exploration for new morphological and genetic markers of lung tissue stem cells -
2020.9.30 Seminar
DECODE seminar in September
Speaker: Kenneth Ho (Laboratory for Developmental Dynamics)
Title: Sharing and accessing data - SSBD and Data Platform -
2020.7.28 Seminar
DECODE seminar in July
Speaker: Nuria Taberner Carretero (Laboratory for Vascular Morphogenesis)
Title: Super resolution imaging of actomyosin organization to determine blood vessel state. -
2020.6.23 Seminar
DECODE seminar in June
Speaker: Go Shioi (Laboratory for Comprehensive Bioimaging)
Title: Next-generation SPIM for live imaging and all-cell tracking of a whole mouse embryo -
2020.6.11 Luncheon Seminar
DECODE Luncheon seminar in June
Speaker: Tetsuro Ariyoshi (Laboratory for Cell Polarity Regulation)
Title: Imaging single-cell transcriptional dynamics of the endogenous genes with a fluorogenic RNA. -
2020.6.4 Luncheon Seminar
DECODE Luncheon seminar in June
Speaker: Taisaku Ogawa (Laboratory for Prediction of Cell Systems Dynamics)
Title: An automated system of single cell picking and sequencing for DECODE project and its application -
2020.5.26 Seminar
DECODE seminar in May
Speaker: Osamu Takenouchi (Laboratory for Chromosome Segregation)
Title: Development of an imaging toolbox for analyzing dynamics of individual chromosomes in live mouse oocytes
Speaker: Sooyeon Kim (Laboratory for Cell Systems Control)
Title: Ultrasensitive bioanalyses realized by single-molecule imaging -
2020.5.21 Luncheon Seminar
DECODE Luncheon seminar in May
Speaker: Junya Ichinose (Laboratory for Comprehensive Bioimaging)
Title: Application developments of DECODE for industry fields. -
2020.4.28 Seminar
DECODE seminar in April
Speaker: Daisuke Takao (Graduate School of Medicine and Faculty of Medicine, The University of Tokyo)
Title: Robust Classification of Cell Cycle Phase and Biological Feature Extraction by Image-Based Deep Learning -
2020.2.25 Seminar
DECODE seminar in February
Speaker: Fumio Matsuzaki (Laboratory for Cell Asymmetry)
Title: Analysis of cell lineage of neural stem cells in the convoluted brain formation.
Speaker: Yo Tanaka (Laboratory for Integrated Biodevice)
Title: High-throughput DECODE using glass microfluidic chip -
2020.1.28 Seminar
DECODE seminar in January
Speaker: Arno Germond (Laboratory for Comprehensive Bioimaging)
Title: Predicting gene expression and metabolic functions from label-free Raman imaging in bacteria and human IPS cells undergoing differentiation. -
2019.12.24 Seminar
DECODE seminar in December
Speaker: Taketoshi Kambara (Laboratory for Cell Polarity Regulation)
Title: Toward DECODEing giraffe neural stem cell. -
2019.11.26 Seminar
DECODE seminar in November
Speaker: Koji Kyoda (Laboratory for Developmental Dynamics)
Title: Computational analysis of nuclear division dynamics in early C. elegans embryos
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2019.10.29 Seminar
DECODE seminar in October
Speaker 1: Naoya Tochio (Laboratory for Cellular Structural Biology)
Title: Development of NMR methods to determine diverse types and/or states of cells
Speaker 2: Minoru Takasato (Laboratory for Human Organogenesis)
Title: Investigation of cell specificity responsible for MET events within kidney organoids using machine-learning approaches -
2019.10.1 Seminar
DECODE seminar in September
Speaker 1: Tomohiro Masuda (Laboratory for Retinal Regeneration)
Title: Single-cell analysis of human stem cell-derived retinal organoids
Speaker 2: Takashi Fujimura (Laboratory for Lung Development and Regeneration)
Title: Exploration for morphological and genetic markers of alveoli tissue stem cells -
2019.7.23 Seminar
DECODE seminar in July
Speaker: Hideaki Fujita (Laboratory for Comprehensive Bioimaging)
Title: Using Raman for DECODE -
2019.7.12 Seminar
DECODE project introductory seminar
July 12, 3:00pm-, Kobe, A7F Seminar Room, DB Bldg.
Broadcasting: Yokohama & Osaka
This seminar was held to introduce the DECODE project and to invite applications for collaborative research in BDR.
Poster＞
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2019.7.2 Seminar
DECODE seminar in June
Speaker: Taisaku Ogawa (Laboratory for Prediction of Cell Systems Dynamics)
Title: Developing technologies to combinate imaging and sequencing on single-cell level -
2019.5.28 Seminar
DECODE seminar in May
Speaker: Tomoharu Iwata (NTT Communication Science Laboratories / Mathematical Statistics Team, RIKEN Center for Advanced Intelligence Project)
Title: Machine Learning for Biosciences -
2019.4.23 Seminar
DECODE seminar in April
Speaker: Akira Takai (Laboratory for Cell Polarity Regulation)
Title: Development of new probes for the visualization and manipulation of RNA in living cells -
2019.3.29 Seminar
DECODE seminar in March
Speaker: Yoichiro Yamamoto (Pathology Informatics Team, RIKEN Center for Advanced Intelligence Project)
Title: Automated acquisition of knowledge from images -
2019.2.26 Seminar
DECODE seminar in February
Speaker: Minoru Takasato (Laboratory for Human Organogenesis)
Title: Recreating the kidney from stem cells -
2019.1.22 Seminar
DECODE seminar in January
Speaker: Mitsuru Morimoto (Laboratory for Lung Development and Regeneration)
Title: Lung development and regeneration -
2018.12.25 Seminar
DECODE seminar in December
Speaker: Masato Yasui (Laboratory for Cell Signaling Dynamics)
Title: Applications of Automated in-cell Single-molecule Imaging System (AiSIS) -
2018.11.27 Seminar
DECODE seminar in November
Speaker: Chikara Furusawa (Laboratory for Multiscale Biosystem Dynamics)
Title: Decoding gut microbiota by imaging analysis of fecal samples -
2018.9.25 Seminar
DECODE seminar in September
Speaker: Naoya Takeishi (Structured Learning Team, RIKEN Center for Advanced Intelligence Project)
Title: Extracting Distinctive Coherent Patterns from Labeled Spatio-Temporal Data Collections -
2018.8.28 Seminar
DECODE seminar in August
Speaker: Yohei Koyama (Laboratory for Computational Molecular Design)
Title: A brief review of recent advances in trajectory analysis of molecular dynamics simulations -
2018.7.24 Seminar
DECODE seminar in July
Speaker: Koji Ochiai (Laboratory for Biologically Inspired Computing)
Title: Cell identification through machine learning -
2018.6.26 Seminar
DECODE seminar in June
Speaker: Soya Shinkai (Laboratory for Developmental Dynamics)
Title: Deciphering Hi-C data onto polymer modeling -
2018.5.22 Seminar
DECODE seminar in May
Speaker: Yoshinobu Kawahara (Structured Learning Team, RIKEN Center for Advanced Intelligence Project)
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2018.4.24 Seminar
DECODE seminar in April
Speaker: Daisuke Ino (Laboratory for Cell Polarity Regulation)
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2018.4.18 Topic
RIKEN evening seminar [April 18]
Shiroguchi unit leader, a member of the project introduced technologies related to the project.
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2018.3.28 Topic
DECODE seminar in FY2018
In FY2018, DECODE seminar will be held monthly in QBiC Building, Osaka. Basic technology to support the DECODE has been developed and it is the time to bloom.
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2018.3.27 Seminar
DECODE seminar in March
Speaker: Masato Yasui
Title: Quick Auto Focus and PALM
The speaker explained the development of auto focus system installed in AiSIS (Automatic In-cell Single Molecule Imaging System) and application to PALM (Photoactivated Localization Microscopy). -
2018.2.27 Seminar
DECODE seminar in February
Speaker: Taisaku Ogawa (Laboratory for Integrative Omics)
Title: Combination of imaging and RNA sequencing for single cells
The speaker talked about how he captures cell images and picks up individual cells for gene analysis, which is a major approach for the DECODE technique. -
2018.1.23 Seminar
DECODE seminar in January
Speaker: Tetsuro Ariyoshi (Laboratory for Cell Polarity Regulation)
Title: A bright fluorogenic RNA for visualizing spatiotemporal mRNA dynamics at subcellular resolution
The speaker explained the development of the probes to visualize mRNA in living cells. Subsequently the application of the probe was discussed. -
2017.12.26 Seminar
DECODE seminar in December
Speaker: Chamidu Atupelage (Laboratory for Developmental Dynamics)
Title: Deep convolutional neural network-based method for segmenting DIC microscopic images of C. elegans embryos
Image processing technique based on machine learning was introduced and discussed。 -
2017.11.28 Seminar
DECODE seminar in November
Speaker: Arno Germond (Laboratory for Comprehensive Bioimaging)
Title: Cell type discrimination using multiplex Raman imaging and machine learning
The speaker introduced a novel technique to classify cell types using Raman spectra and machine learning. -
2017.10.24 Seminar
DECODE seminar in October
Speaker: Koji Ochiai (Laboratory for Biochemical Simulation)
Title: Cell differentiation estimate by image recognition
The speaker talked about the basic technology of the DECODE to distinguish cell types based on the cell images using machine learning. -
2017.9.26 Seminar
DECODE seminar in September
Speaker: Hideyuki Yaginuma (Laboratory for Cell Polarity Regulation)
Title: Visualization of intracellular metabolic changes using an improved fluorescent ATP indicator in mammalian cells
We discussed what we can obtain observing ATP concentration in individual cells and its time course. -
2017.8.22 Seminar
DECODE seminar in August
Speaker: Koji Kyoda (Laboratory for Developmental Dynamics)
Title: A Data Platform for the DECODE Project
He introduced a data platform for the DECODE project. This platform will enable us to store and share heterogeneous biological data such as image data, RNAseq data, and spectral data. -
2017.6.27 Seminar
DECODE seminar in June
Speaker: Arno Germond (Laboratory for Comprehensive Bioimaging)
Title: Exploring the relation between gene and Ramanspectra
The speaker talked about the technology to link Ramanspectra obtained from individual cells with the gene expression data.