News & Topics

FY2023   FY2022   FY2021   FY2020   FY2019   FY2018   FY2017

    FY 2023

  • 2023.10.24 Seminar

    DECODE seminar in October

    Speaker: Osamu Takenouchi (Laboratory for Chromosome Segregation)
    Title: Development of an imaging toolbox for analysis of individual chromosome dynamics in live mouse oocytes

  • 2023.9.26 Seminar

    DECODE seminar in September

    Speaker: Masaharu Uno (Laboratory for Molecular Biology of Aging)
    Title: Prediction of aging status using image data of C. elegans

  • 2023.7.25 Seminar

    DECODE seminar in July

    Speaker: Ko Sugawara (Laboratory for Developmental Dynamics)
    Title: ELEPHANT: an image analysis tool for cell tracking using sparse annotation-based deep learning

  • 2023.6.27 Seminar

    DECODE seminar in June

    Speaker: Hideya Sakaguchi (RIKEN BDR-Otsuka Pharmaceutical Collaboration Center)
    Title: Capturing self-organized formation process of epithelium and region using human neural organoids

  • 2023.5.23 Seminar

    DECODE seminar in May

    Speaker: Koki Yamamoto (Laboratory for Cell Polarity Regulation)
    Title: Investigation of liquid properties in nanochannels and its application

  • 2023.4.25 Seminar

    DECODE seminar in April

    Speaker: Kensuke Sasaki (Laboratory for Comprehensive Bioimaging)
    Title: Toward the DECODing the cell state using Raman x RNA-sequence cellular fingerprintingcellular fingerprinting

    Speaker: Junya Ichinose (Laboratory for Comprehensive Bioimaging)
    Title: Quantitative prediction of rice starch digestibility using Raman spectroscopy and multivariate calibration analysis

  • FY 2022

  • 2023.3.28 Seminar

    DECODE seminar in March

    Speaker: SHENGQUN HOU (Laboratory for Neuroepitranscriptomics)
    Title: SCAMAN: a high through-put spine analysis method for brain-wide excitatory transmission evaluation

  • 2023.2.28 Seminar

    DECODE seminar in February

    Speaker: Daisuke Taniguchi (Laboratory for Cell Polarity Regulation)
    Title: Cell tracking using rotation-invariant fingerprinting

  • 2023.1.24 Seminar

    DECODE seminar in January

    Speaker: Minoru Takasato (Laboratory for Human Organogenesis)
    Title: Cellular specificity of MET during nephrogenesis

    Speaker: Mitsuru Morimoto (Laboratory for Lung Development and Regeneration)
    Title: Exploring Features for Lung Tissue Stem Cells Using Intracellular Structural Labeling Technology

  • 2022.12.20 Seminar

    DECODE seminar in December

    Speaker: Jianshi Jin (Laboratory for Prediction of Cell Systems Dynamics)
         Yungyu Tsai(Laboratory for Prediction of Cell Systems Dynamics)
    Title: Upgrading of ALPS (Automated Live-imaging and cell Picking System) towards wider applications.

  • 2022.11.22 Seminar

    DECODE seminar in November

    Speaker: Naoya Tochio (Laboratory for Cellular Structural Biology)
    Title: Hydrogen peroxide-induced changes in HeLa and Jurkat cells observed using Cell-condition & Cell-secretion tandem NMR

  • 2022.10.25 Seminar

    DECODE seminar in October

    Speaker: Chentao WEN (Laboratory for Developmental Dynamics)
    Title: Exploring brain dynamics and structure with machine learning techniques

  • 2022.10.4 Seminar

    DECODE seminar in September

    Speaker: Sooyeon Kim (Laboratory for Cell Systems Control)
    Title: Next-generation bioassays using 3D single-molecule optical imaging

    Speaker: Osamu Takenouchi (Laboratory for Chromosome Segregation)
    Title: Development of an imaging tool box for analysis of individual chromosome dynamics in live mouse oocytes

  • 2022.8.23 Seminar

    DECODE seminar in August

    Speaker: Nobuhisa Okada (Laboratory for Cell Asymmetry)

  • 2022.7.26 Seminar

    DECODE seminar in July

    Speaker: Kensuke Sasaki (Laboratory for Comprehensive Bioimaging)
    Title: Citrus fruits quality assessment using fluorescence multispectral imaging

    Speaker: Hideaki Fujita (Laboratory for Comprehensive Bioimaging)
    Title: Estimation of crossbridge state changes during cardiomyocyte beating using second harmonic generation anisotropy measurements

  • 2022.6.28 Seminar

    DECODE seminar in June

    Speaker: Hideya Sakaguchi (RIKEN BDR-Otsuka Pharmaceutical Collaboration Center)
    Title: Capturing the neuroepithelium formation during the development of neural organoids

    Speaker: Masaharu Uno (Laboratory for Molecular Biology of Aging)
    Title: Prediction of C. elegans aging status using image data

  • 2022.5.24 Seminar

    DECODE seminar in May

    Speaker: Zhong Chongxia (Laboratory for Cell Polarity Regulation)
    Speaker: Yugo Inutsuka (Laboratory for Cell Polarity Regulation)

  • 2022.4.26 Seminar

    DECODE seminar in April

    Speaker: Yo Tanaka (Laboratory for Integrated Biodevice)
    Title: Investigation and application of nanospace properties

  • FY 2021

  • 2022.3.22 Seminar

    DECODE seminar in March

    Speaker: Tobias Frick (Laboratory for Prediction of Cell Systems Dynamics)

  • 2022.2.22 Seminar

    DECODE seminar in February

    Speaker: Tomohiro Masuda (Laboratory for Retinal Regeneration)
    Title: Single cell analysis of human iPS-derived retinal organoids

    Speaker: Minoru Takasato (Laboratory for Human Organogenesis)
    Title: Cell specificity of undergoing MET during kidney development

  • 2022.1.25 Seminar

    DECODE seminar in January

    Speaker: Shuichi Onami (Laboratory for Developmental Dynamics)
    Title: What is Research DX at RIKEN and BDR? How should we promote it?

  • 2021.12.21 Seminar

    DECODE seminar in December

    Speaker: Naoya Tochio (Laboratory for Cellular Structural Biology)
    Title: Hydrogen peroxide-induced changes in HeLa cells observed using Cell-condition & Cell-secretion tandem NMR

    Speaker: Mitsuru Morimoto(Laboratory for Lung Development and Regeneration)
    Title: Decoding new lung stem cell features by single-cell morphometry.

  • 2021.11.30 Seminar

    DECODE seminar in November

    Speaker: Kensuke Sasaki (Laboratory for Comprehensive Bioimaging)
    Title: Towards the decoding of citrus fruit states with multispectral imaging

    Speaker: Junya Ichinose(Laboratory for Comprehensive Bioimaging)
    Title: Specific detection of microRNAs by surface-enhanced resonance Raman scattering

  • 2021.10.26 Seminar

    DECODE seminar in October

    Speaker: Nuria Taberner (Laboratory for Vascular Morphogenesis)
    Title: Actomyosin organization in lumenized developing blood vessels.

  • 2021.9.28 Seminar

    DECODE seminar in September

    Speaker: Daisuke Takao (Laboratory for Cell Polarity Regulation)
    Title: AI-based cell tracking and profiling for analysis of cell population dynamics

  • 2021.7.27 Seminar

    DECODE seminar in July

    Speaker: Jianshi (Frank) Jin (Laboratory for Prediction of Cell Systems Dynamic)
    Title: Decoding single-cell transcriptomic states from cell images enabled by robotic data acquisition and deep learning

  • 2021.6.22 Seminar

    DECODE seminar in June

    Speaker: Sooyeon Kim (Laboratory for Cell Systems Control)
    Title: Next-generation biochemical analyses using single-molecule volumetric imaging

    Speaker: Osamu Takenouchi(Laboratory for Chromosome Segregation)
    Title: Development and application of an imaging tool for analyzing individual chromosome dynamics in live mouse oocytes

  • 2021.5.25 Seminar

    DECODE seminar in May

    Speaker: Koji Kyoda (Laboratory for Developmental Dynamics)
    Title: Computational analysis of nuclear division dynamics in early C. elegans embryos

  • 2021.4.27 Seminar

    DECODE seminar in April

    Speaker: Hideya Sakaguchi (RIKEN BDR-Otsuka Pharmaceutical Collaboration Center)
    Title:Towards decoding the mechanism of neuroepithelium formation during the development of neural organoids.

  • FY 2020

  • 2021.3.23 Seminar

    DECODE seminar in March

    Speaker: Yo Tanaka (RIKEN BDR-Otsuka Pharmaceutical Collaboration Center)
    Title:Nano fluidic chip -From micro to nano-

  • 2021.2.16 Seminar

    DECODE seminar in February

    Speaker: Go Shioi (Laboratory for Comprehensive Bioimaging)
    Title:Next-generation SPIM : from single cells to a whole embryo

    Speaker: Hideaki Fujita (Laboratory for Comprehensive Bioimaging)
    Title:Distorted cardiomyogenesis pathway of disease-derived iPSC revealed by Raman spectroscopy

  • 2021.1.26 Seminar

    DECODE seminar in January

    Speaker: Tomohiro Masuda (Laboratory for Retinal Regeneration)
    Title:Identification of the cellular properties of retinal progenitor cells suitable for transplantation by using scRNA-seq

  • 2020.12.22 Seminar

    DECODE seminar in Dcember

    Speaker: Kazuho Ikeda (Laboratory for Cell Polarity Regulation)
    Title:Live imaging of genomic locus by using specific fluorescent probes.

  • 2020.11.24 Seminar

    DECODE seminar in November

    Speaker: Taisaku Ogawa, Jianshi Jin (Laboratory for Prediction of Cell Systems Dynamics)
    Title:Towards deep learning-based prediction of single cell gene expression state from time-lapse images

  • 2020.10.27 Seminar

    DECODE seminar in October

    Speaker: Naoya Tochio (Laboratory for Cellular Structural Biology)
    Title: The tandemly connected NMR for noninvasive observation of cell state

    Speaker: Takashi Fujimura (Laboratory for Lung Development and Regeneration)
    Title: Exploration for new morphological and genetic markers of lung tissue stem cells

  • 2020.9.30 Seminar

    DECODE seminar in September

    Speaker: Kenneth Ho (Laboratory for Developmental Dynamics)
    Title: Sharing and accessing data - SSBD and Data Platform

  • 2020.7.28 Seminar

    DECODE seminar in July

    Speaker: Nuria Taberner Carretero (Laboratory for Vascular Morphogenesis)
    Title: Super resolution imaging of actomyosin organization to determine blood vessel state.

  • 2020.6.23 Seminar

    DECODE seminar in June

    Speaker: Go Shioi (Laboratory for Comprehensive Bioimaging)
    Title: Next-generation SPIM for live imaging and all-cell tracking of a whole mouse embryo

  • 2020.6.11 Luncheon Seminar

    DECODE Luncheon seminar in June

    Speaker: Tetsuro Ariyoshi (Laboratory for Cell Polarity Regulation)
    Title: Imaging single-cell transcriptional dynamics of the endogenous genes with a fluorogenic RNA.

  • 2020.6.4 Luncheon Seminar

    DECODE Luncheon seminar in June

    Speaker: Taisaku Ogawa (Laboratory for Prediction of Cell Systems Dynamics)
    Title: An automated system of single cell picking and sequencing for DECODE project and its application

  • 2020.5.26 Seminar

    DECODE seminar in May

    Speaker: Osamu Takenouchi (Laboratory for Chromosome Segregation)
    Title: Development of an imaging toolbox for analyzing dynamics of individual chromosomes in live mouse oocytes

    Speaker: Sooyeon Kim (Laboratory for Cell Systems Control)
    Title: Ultrasensitive bioanalyses realized by single-molecule imaging

  • 2020.5.21 Luncheon Seminar

    DECODE Luncheon seminar in May

    Speaker: Junya Ichinose (Laboratory for Comprehensive Bioimaging)
    Title: Application developments of DECODE for industry fields.

  • 2020.4.28 Seminar

    DECODE seminar in April

    Speaker: Daisuke Takao (Graduate School of Medicine and Faculty of Medicine, The University of Tokyo)
    Title: Robust Classification of Cell Cycle Phase and Biological Feature Extraction by Image-Based Deep Learning

  • FY 2019

    • 2020.2.25 Seminar

      DECODE seminar in February

      Speaker: Fumio Matsuzaki (Laboratory for Cell Asymmetry)
      Title: Analysis of cell lineage of neural stem cells in the convoluted brain formation.

      Speaker: Yo Tanaka (Laboratory for Integrated Biodevice)
      Title: High-throughput DECODE using glass microfluidic chip

    • 2020.1.28 Seminar

      DECODE seminar in January

      Speaker: Arno Germond (Laboratory for Comprehensive Bioimaging)
      Title: Predicting gene expression and metabolic functions from label-free Raman imaging in bacteria and human IPS cells undergoing differentiation.

    • 2019.12.24 Seminar

      DECODE seminar in December

      Speaker: Taketoshi Kambara (Laboratory for Cell Polarity Regulation)
      Title: Toward DECODEing giraffe neural stem cell.

    • 2019.11.26 Seminar

      DECODE seminar in November

      Speaker: Koji Kyoda (Laboratory for Developmental Dynamics)
      Title: Computational analysis of nuclear division dynamics in early C. elegans embryos

    • 2019.10.29 Seminar

      DECODE seminar in OctoberPhoto of SpeakerPhoto of Speaker

      Speaker 1: Naoya Tochio (Laboratory for Cellular Structural Biology)
      Title: Development of NMR methods to determine diverse types and/or states of cells

      Speaker 2: Minoru Takasato (Laboratory for Human Organogenesis)
      Title: Investigation of cell specificity responsible for MET events within kidney organoids using machine-learning approaches

    • 2019.10.1 Seminar

      DECODE seminar in SeptemberPhoto of SpeakerPhoto of Speaker

      Speaker 1: Tomohiro Masuda (Laboratory for Retinal Regeneration)
      Title: Single-cell analysis of human stem cell-derived retinal organoids

      Speaker 2: Takashi Fujimura (Laboratory for Lung Development and Regeneration)
      Title: Exploration for morphological and genetic markers of alveoli tissue stem cells

    • 2019.7.23 Seminar

      DECODE seminar in JulyPhoto of Speaker

      Speaker: Hideaki Fujita (Laboratory for Comprehensive Bioimaging)
      Title: Using Raman for DECODE


    • 2019.7.12 Seminar

      DECODE project introductory seminar

      July 12, 3:00pm-, Kobe, A7F Seminar Room, DB Bldg.
      Broadcasting: Yokohama & Osaka
      This seminar was held to introduce the DECODE project and to invite applications for collaborative research in BDR.
      Poster>

    • 2019.7.2 Seminar

      DECODE seminar in JunePhoto of Speaker

      Speaker: Taisaku Ogawa (Laboratory for Prediction of Cell Systems Dynamics)
      Title: Developing technologies to combinate imaging and sequencing on single-cell level


    • 2019.5.28 Seminar

      DECODE seminar in MayPhoto of Speaker

      Speaker: Tomoharu Iwata (NTT Communication Science Laboratories / Mathematical Statistics Team, RIKEN Center for Advanced Intelligence Project)
      Title: Machine Learning for Biosciences

    • 2019.4.23 Seminar

      DECODE seminar in AprilPhoto of Speaker

      Speaker: Akira Takai (Laboratory for Cell Polarity Regulation)
      Title: Development of new probes for the visualization and manipulation of RNA in living cells


    FY 2018

    • 2019.3.29 Seminar

      DECODE seminar in MarchPhoto of Speaker

      Speaker: Yoichiro Yamamoto (Pathology Informatics Team, RIKEN Center for Advanced Intelligence Project)
      Title: Automated acquisition of knowledge from images

    • 2019.2.26 Seminar

      DECODE seminar in FebruaryPhoto of Speaker

      Speaker: Minoru Takasato (Laboratory for Human Organogenesis)
      Title: Recreating the kidney from stem cells


    • 2019.1.22 Seminar

      DECODE seminar in JanuaryPhoto of Speaker

      Speaker: Mitsuru Morimoto (Laboratory for Lung Development and Regeneration)
      Title: Lung development and regeneration


    • 2018.12.25 Seminar

      DECODE seminar in DecemberPhoto of Speaker

      Speaker: Masato Yasui (Laboratory for Cell Signaling Dynamics)
      Title: Applications of Automated in-cell Single-molecule Imaging System (AiSIS)


    • 2018.11.27 Seminar

      DECODE seminar in NovemberPhoto of Speaker

      Speaker: Chikara Furusawa (Laboratory for Multiscale Biosystem Dynamics)
      Title: Decoding gut microbiota by imaging analysis of fecal samples


    • 2018.9.25 Seminar

      DECODE seminar in SeptemberPhoto of Speaker

      Speaker: Naoya Takeishi (Structured Learning Team, RIKEN Center for Advanced Intelligence Project)
      Title: Extracting Distinctive Coherent Patterns from Labeled Spatio-Temporal Data Collections

    • 2018.8.28 Seminar

      DECODE seminar in AugustPhoto of Speaker

      Speaker: Yohei Koyama (Laboratory for Computational Molecular Design)
      Title: A brief review of recent advances in trajectory analysis of molecular dynamics simulations


    • 2018.7.24 Seminar

      DECODE seminar in JulyPhoto of Speaker

      Speaker: Koji Ochiai (Laboratory for Biologically Inspired Computing)
      Title: Cell identification through machine learning


    • 2018.6.26 Seminar

      DECODE seminar in JunePhoto of Speaker

      Speaker: Soya Shinkai (Laboratory for Developmental Dynamics)
      Title: Deciphering Hi-C data onto polymer modeling


    • 2018.5.22 Seminar

      DECODE seminar in MayPhoto of Speaker

      Speaker: Yoshinobu Kawahara (Structured Learning Team, RIKEN Center for Advanced Intelligence Project)


    • 2018.4.24 Seminar

      DECODE seminar in AprilPhoto of Speaker

      Speaker: Daisuke Ino (Laboratory for Cell Polarity Regulation)



    • 2018.4.18 Topic

      RIKEN evening seminar [April 18]

      Shiroguchi unit leader, a member of the project introduced technologies related to the project.

    FY 2017

    • 2018.3.28 Topic

      DECODE seminar in FY2018

      In FY2018, DECODE seminar will be held monthly in QBiC Building, Osaka. Basic technology to support the DECODE has been developed and it is the time to bloom.


    • 2018.3.27 Seminar

      DECODE seminar in MarchPhoto of Speaker

      Speaker: Masato Yasui
      Title: Quick Auto Focus and PALM
      The speaker explained the development of auto focus system installed in AiSIS (Automatic In-cell Single Molecule Imaging System) and application to PALM (Photoactivated Localization Microscopy).

    • 2018.2.27 Seminar

      DECODE seminar in FebruaryPhoto of Speaker

      Speaker: Taisaku Ogawa (Laboratory for Integrative Omics)
      Title: Combination of imaging and RNA sequencing for single cells
      The speaker talked about how he captures cell images and picks up individual cells for gene analysis, which is a major approach for the DECODE technique.

    • 2018.1.23 Seminar

      DECODE seminar in JanuaryPhoto of Speaker

      Speaker: Tetsuro Ariyoshi (Laboratory for Cell Polarity Regulation)
      Title: A bright fluorogenic RNA for visualizing spatiotemporal mRNA dynamics at subcellular resolution
      The speaker explained the development of the probes to visualize mRNA in living cells. Subsequently the application of the probe was discussed.

    • 2017.12.26 Seminar

      DECODE seminar in DecemberPhoto of Speaker

      Speaker: Chamidu Atupelage (Laboratory for Developmental Dynamics)
      Title: Deep convolutional neural network-based method for segmenting DIC microscopic images of C. elegans embryos
      Image processing technique based on machine learning was introduced and discussed。

    • 2017.11.28 Seminar

      DECODE seminar in NovemberPhoto of Speaker

      Speaker: Arno Germond (Laboratory for Comprehensive Bioimaging)
      Title: Cell type discrimination using multiplex Raman imaging and machine learning
      The speaker introduced a novel technique to classify cell types using Raman spectra and machine learning.

    • 2017.10.24 Seminar

      DECODE seminar in OctoberPhoto of Speaker

      Speaker: Koji Ochiai (Laboratory for Biochemical Simulation)
      Title: Cell differentiation estimate by image recognition
      The speaker talked about the basic technology of the DECODE to distinguish cell types based on the cell images using machine learning.

    •  
    • 2017.9.26 Seminar

      DECODE seminar in SeptemberPhoto of Speaker

      Speaker: Hideyuki Yaginuma (Laboratory for Cell Polarity Regulation)
      Title: Visualization of intracellular metabolic changes using an improved fluorescent ATP indicator in mammalian cells
      We discussed what we can obtain observing ATP concentration in individual cells and its time course.

    • 2017.8.22 Seminar

      DECODE seminar in AugustPhoto of Speaker

      Speaker: Koji Kyoda (Laboratory for Developmental Dynamics)
      Title: A Data Platform for the DECODE Project
      He introduced a data platform for the DECODE project. This platform will enable us to store and share heterogeneous biological data such as image data, RNAseq data, and spectral data.

    • 2017.6.27 Seminar

      DECODE seminar in June Photo of Speaker

      Speaker: Arno Germond (Laboratory for Comprehensive Bioimaging)
      Title: Exploring the relation between gene and Ramanspectra
      The speaker talked about the technology to link Ramanspectra obtained from individual cells with the gene expression data.