Research topics
- Combining live cell imaging and single-cell RNA sequencing
- Three-dimensional ultrafast live imaging of intracellular microstructure
- Large-scale automatized collection of data pairs of Raman Spectrum-RNA Sequence in a single cell
- Combining super-resolution imaging of actomyosin organization and machine learning to identify mechanicalstates of endothelial cells in developing blood capillaries.
- An imaging toolbox for chromosome identification in live mouse oocyte and embryo
- Development of the method to grasp the distinct Cell-states using NMR
- Investigation of cell specificity responsible for MET events within kidney organoids using machine-learning approaches
- Stem cell lineages of the complex brain and their underlying principle
- Nano fluidic chip -From micro to nano-
- Developing single-molecule bioanalysesto detectand distinguish intracellular molecules.
- Single cell analysis of human iPS-derived retinal organoid
- Exploration of a novel tissue stem cell population and niche
- Decoding the mechanism of neural epithelium formation during the development of neural organoids.
- Prediction of aging status using image data
News&Topics
The DECODE seminar is only open to members of the RIKEN Center for Biosystems Dynamics Research.
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2023.10.24 Seminar
DECODE seminar in October
Speaker: Osamu Takenouchi (Laboratory for Chromosome Segregation)
Title: Development of an imaging toolbox for analysis of individual chromosome dynamics in live mouse oocytes
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2023.9.26 Seminar
DECODE seminar in September
Speaker: Masaharu Uno (Laboratory for Molecular Biology of Aging)
Title: Prediction of aging status using image data of C. elegans
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2023.7.25 Seminar
DECODE seminar in July
Speaker: Ko Sugawara (Laboratory for Developmental Dynamics)
Title: ELEPHANT: an image analysis tool for cell tracking using sparse annotation-based deep learning
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2023.6.27 Seminar
DECODE seminar in June
Speaker: Hideya Sakaguchi (RIKEN BDR-Otsuka Pharmaceutical Collaboration Center)
Title: Capturing self-organized formation process of epithelium and region using human neural organoids
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2023.5.23 Seminar
DECODE seminar in May
Speaker: Koki Yamamoto (Laboratory for Cell Polarity Regulation)
Title: Investigation of liquid properties in nanochannels and its application
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2023.4.25 Seminar
DECODE seminar in April
Speaker: Kensuke Sasaki (Laboratory for Comprehensive Bioimaging)
Title: Toward the DECODing the cell state using Raman x RNA-sequence cellular fingerprintingcellular fingerprinting
Speaker: Junya Ichinose (Laboratory for Comprehensive Bioimaging)
Title: Quantitative prediction of rice starch digestibility using Raman spectroscopy and multivariate calibration analysis
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2023.3.28 Seminar
DECODE seminar in March
Speaker: SHENGQUN HOU (Laboratory for Neuroepitranscriptomics)
Title: SCAMAN: a high through-put spine analysis method for brain-wide excitatory transmission evaluation
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2023.2.28 Seminar
DECODE seminar in February
Speaker: Daisuke Taniguchi (Laboratory for Cell Polarity Regulation)
Title: Cell tracking using rotation-invariant fingerprinting
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2023.1.24 Seminar
DECODE seminar in January
Speaker: Minoru Takasato (Laboratory for Human Organogenesis)
Title: Cellular specificity of MET during nephrogenesis
Speaker: Mitsuru Morimoto (Laboratory for Lung Development and Regeneration)
Title: Exploring Features for Lung Tissue Stem Cells Using Intracellular Structural Labeling Technology
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2022.12.20 Seminar
DECODE seminar in December
Speaker: Jianshi Jin (Laboratory for Prediction of Cell Systems Dynamics)
Yungyu Tsai(Laboratory for Prediction of Cell Systems Dynamics)
Title: Upgrading of ALPS (Automated Live-imaging and cell Picking System) towards wider applications.
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2022.11.22 Seminar
DECODE seminar in November
Speaker: Naoya Tochio (Laboratory for Cellular Structural Biology)
Title: Hydrogen peroxide-induced changes in HeLa and Jurkat cells observed using Cell-condition & Cell-secretion tandem NMR
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2022.10.25 Seminar
DECODE seminar in October
Speaker: Chentao WEN (Laboratory for Developmental Dynamics)
Title: Exploring brain dynamics and structure with machine learning techniques
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2022.10.4 Seminar
DECODE seminar in September
Speaker: Sooyeon Kim (Laboratory for Cell Systems Control)
Title: Next-generation bioassays using 3D single-molecule optical imaging
Speaker: Osamu Takenouchi (Laboratory for Chromosome Segregation)
Title: Development of an imaging tool box for analysis of individual chromosome dynamics in live mouse oocytes
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2022.8.23 Seminar
DECODE seminar in August
Speaker: Nobuhisa Okada (Laboratory for Cell Asymmetry)
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2022.7.26 Seminar
DECODE seminar in July
Speaker: Kensuke Sasaki (Laboratory for Comprehensive Bioimaging)
Title: Citrus fruits quality assessment using fluorescence multispectral imaging
Speaker: Hideaki Fujita (Laboratory for Comprehensive Bioimaging)
Title: Estimation of crossbridge state changes during cardiomyocyte beating using second harmonic generation anisotropy measurements
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2022.6.28 Seminar
DECODE seminar in June
Speaker: Hideya Sakaguchi (RIKEN BDR-Otsuka Pharmaceutical Collaboration Center)
Title: Capturing the neuroepithelium formation during the development of neural organoids
Speaker: Masaharu Uno (Laboratory for Molecular Biology of Aging)
Title: Prediction of C. elegans aging status using image data
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2022.5.24 Seminar
DECODE seminar in May
Speaker: Zhong Chongxia (Laboratory for Cell Polarity Regulation)
Speaker: Yugo Inutsuka (Laboratory for Cell Polarity Regulation)
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2022.4.26 Seminar
DECODE seminar in April
Speaker: Yo Tanaka (Laboratory for Integrated Biodevice)
Title: Investigation and application of nanospace properties
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2022.3.22 Seminar
DECODE seminar in March
Speaker: Tobias Frick (Laboratory for Prediction of Cell Systems Dynamics)
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2022.2.22 Seminar
DECODE seminar in February
Speaker: Tomohiro Masuda (Laboratory for Retinal Regeneration)
Title: Single cell analysis of human iPS-derived retinal organoids
Speaker: Minoru Takasato (Laboratory for Human Organogenesis)
Title: Cell specificity of undergoing MET during kidney development
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2022.1.25 Seminar
DECODE seminar in January
Speaker: Shuichi Onami (Laboratory for Developmental Dynamics)
Title: What is Research DX at RIKEN and BDR? How should we promote it?